Subscribe

Subscribe to our Newsletter and get informed about new publication regulary and special discounts for subscribers!

JHPR > JHPR Volume 2 > Identification of Vietnamese Native Rhododendron...
< Back to Volume

Identification of Vietnamese Native Rhododendron and Enkianthus Species of Ericaceae Family Based on Ribosomal DNA Internal Transcribed Spacer (ITS) Sequence

Full Text PDF

Abstract:

The genus Rhododendron and Enkianthus are belonging the Ericaceae family. In Vietnam there have diversified with 12 genera and about 90 species, of which more rhododendrons 30 species with beautiful flowers and two of Enkianthus species, widely distributed across the regions of the country. In this study, twelve Vietnamese native Rhododendron and Enkianthus species collected from Quang Ninh province were identified based on sequences of the internal transcribed spacer (ITS) regions of nuclear ribosomal DNA. Comparison on sequencing among 12 Vietnamese native Rhododendron and Enkianthus with world's Rhododendron and Enkianthus species, we have determined the accurate same pattern the 5/10 species by recognition molecule forms such as DQ2, DQ5, DQ6, DQ7, DQ8 and five species as DQ1, DQ9, DQ10, DQ11 and DQ12 were determined in genus Rhododendron species. Two varieties of Enkianthus as DQ3 and DQ4 were identified as Enkianthus quinqueflorus. Although the species is still limited but the ITS sequences application revealed the strength of promotion of universal DNA barcode in the delimitation of species and subspecies level for plant group flowering.

Info:

Periodical:
Journal of Horticulture and Plant Research (Volume 2)
Pages:
33-42
Citation:
T.V. Tam et al., "Identification of Vietnamese Native Rhododendron and Enkianthus Species of Ericaceae Family Based on Ribosomal DNA Internal Transcribed Spacer (ITS) Sequence", Journal of Horticulture and Plant Research, Vol. 2, pp. 33-42, 2018
Online since:
May 2018
Export:
Distribution:
References:

[1] M.J.M. Christenhusz, J.W. Byng, The number of know plants species in the world and its annual increase, Phytotaxa. 261 (2016) 201–217.

DOI: https://doi.org/10.11646/phytotaxa.261.3.1

[2] D.J. Mabberly, The plant book: A portable dictionary of the higher plants, Cambridge University Press, (1987).

[3] N.T.T. Huong, Key to the genera of the family Ericaceae (Juss.) in Vietnam, 4th National Conference on Ecology and Natural Resources. 25 (2011) 148–150.

[4] W.S. Judd, K.A. Kron, Circumscription of Ericaceae (Ericales) as determined by preliminary cladistic analyses based on morphological, anatomical and embryological features, Brittonia. 45 (1993) 99–114.

DOI: https://doi.org/10.2307/2807493

[5] K.A. Kron et al., Phylogenetic classification of Ericaceae: molecular and morphological evidence, Bot. Rev. 68(3) (2002) 335–423.

[6] D.F. Chamberlain et al., The genus Rhododendron: its classification and synonymy, first edition, Royal Botanic Garden Edinburgh, (1996).

[7] J. Brown, Tales of the rose tree: ravishing Rhododendrons and their travels around the world, First edition, David R. Godine Publisher, (2004).

[8] A. Gunduz et al., Wild flowers and mad honey, Wild Environ. Med. 18 (2007) 69–71.

[9] P. Kumar, Assessment of impact of climate change on Rhododendrons in Sikkim Himalayas using Maxent modelling: limitations and challenges, Bio Conserv. 21 (2012) 1251–1266.

DOI: https://doi.org/10.1007/s10531-012-0279-1

[10] P.A. Cox, K.N.E. Cox, The encyclopedia of Rhododendron species, Glendoick Publishing, Scotland, (1997).

[11] M. MacKay, S.E. Gardiner, A model for determining ex situ conservation priorities in big genera is provided by analysis of the subgenera of Rhododendron (Ericaceae), Bio Conser. 26 (2016) 189–208.

DOI: https://doi.org/10.1007/s10531-016-1237-0

[12] R. Popescu, B. Kopp, The genus Rhododendron: An ethnopharmacological and toxicological review, J. Ethnopharmacol. 147(1) (2013) 42-62.

DOI: https://doi.org/10.1016/j.jep.2013.02.022

[13] A.A. Anderberg, Cladistic analysis of Enkianthus with notes on the early diversification of the Ericaceae, Nordic J. Bot. 14 (1994) 385–401.

DOI: https://doi.org/10.1111/j.1756-1051.1994.tb00624.x

[14] A.K.M. Golam Sarwar, H. Takahashi, Pollen morphology of Enkianthus (Ericaceae) and its taxo-nomic significance, Grana. 45(3) (2006) 161–174.

DOI: https://doi.org/10.1080/00173130600813345

[15] K.A. Kron, Phylogenetic relationships of Empetraceae, Epacridaceae, Ericaceae, Monotropaceae, and Pyrolaceae: evidence from nuclear ribosomal 18S sequence data, Ann. Bot. 77 (1996) 293–303.

DOI: https://doi.org/10.1006/anbo.1996.0035

[16] A.A. Anderberg et al., Phylogenetic classification of Ericaceae: molecular and morphological evidence, Bot. Rev. 68 (2002) 335–423.

[17] Z.N. Liu et al., Phylogeny of Pyroleae (Ericaceae): Implications for character evolution, Plant Res. 124 (2011) 325–337.

DOI: https://doi.org/10.1007/s10265-010-0376-8

[18] M.V. Pho, The genus Rhododendron in Vietnam, J. Res. Dev. 73 (2009) 51–54.

[19] B. Zhao et al., Genetic relationship among nine Rhododendron species in Qinling Mountains, China using amplified fragment length polymorphism markers, Pak. J. Bot. 47(3) (2015) 1069–1074.

[20] K.A. Kron, W.S. Judd, Systematics of the Lyonia group (Andromedeae, Ericaceae) and the use of species as terminals in higher-level cladistic analyses, Syst. Bot. 22 (1997) 479–492.

DOI: https://doi.org/10.2307/2419822

[21] C.C. Tsai et al., Genetic relationships of Rhododendron (Ericaceae) in Taiwan based on the sequence-of the internal transcribed spacer of ribosomal DNA, J. Hortic. Sci. Biotechnol. 78 (2003) 234–240.

DOI: https://doi.org/10.1080/14620316.2003.11511611

[22] K.H. Trung et al., Molecular phylogeny of the endangered Vietnamese Paphiopedilum species based on the internal transcribed spacer of the nuclear ribosomal DNA, Adv. Biol. Studies. 5(7) (2013) 337–346.

DOI: https://doi.org/10.12988/asb.2013.3315

[23] W. Xu et al., Differentiation of Dendrobium species used as Huangcao Shihu, by rDNA ITS sequence analysis, Planta Med. 72(1) (2005) 89–92.

DOI: https://doi.org/10.1055/s-2005-916228

[24] T.D. Duong et al., Identification of Vietnamese native Dendrobium Species based on ribosomal DNA internal transcribed spacer sequence, Adv. Stud. Biol. 10 (2018) 1–12.

[25] R.C. Edgar, MUSCLE: multiple sequence alignment with high accuracy and high throughput, Nucleic Acids Research. 32(5) (2004) 1792–1797.

DOI: https://doi.org/10.1093/nar/gkh340

[26] W.J. Kress et al., Use of DNA barcodes to identify flowering plants, Proc. Na.t Acad. Sci. 102 (2005) 8369–8374.

[27] P. Sundberg et al., DNA barcoding should accompany taxonomy - the case of Cerebratulus spp. (Nemertea), Mol. Ecol Res. 10(2) (2010) 274–281.

DOI: https://doi.org/10.1111/j.1755-0998.2009.02774.x

[28] R.I. Milne, Phylogeny and biogeography of Rhododendron subsection Pontica, a group with a Tertiary relict distribution, Mol. Phyloge. Evol. 33(2) (2004) 389–401.

DOI: https://doi.org/10.1016/j.ympev.2004.06.009
Show More Hide
Cited By:
This article has no citations.