Subscribe

Subscribe to our Newsletter and get informed about new publication regulary and special discounts for subscribers!

ILNS > Volume 67 > Evaluation of Genetic Diversity of Local-Colored...
< Back to Volume

Evaluation of Genetic Diversity of Local-Colored Rice Landraces Using SSR Markers

Full Text PDF

Abstract:

Analysis of genetic diversity of 90 Vietnamese local-colored rice accessions was evaluated by using 40 SSR markers. The numbers of polymorphic alleles ranged from 3 to 12 alleles per locus and average of 7.1 alleles per locus. The similarity coefficients of the rice landraces fluctuated from 0.76 to 0.93; at a genetic correlation level of 0.78. Ninety accessions of rice landraces were divided into five groups based on analysis of genetic relationships. The results have indicated that 11 markers included: M250, RM302, RM10926, RM208, RM227, RM17231, RM23251, RM5647, RM1376, RM339 and RM228 which gave the unique allele. These markers can be used effectively for genetic diversity of colored rice and provided a specific database and useful materials for landraces identification, local germplasm conservation for further colored rice improvement on rice quality via rice breeding programs in Vietnam.

Info:

Periodical:
International Letters of Natural Sciences (Volume 67)
Pages:
24-34
Citation:
H. T. Hue et al., "Evaluation of Genetic Diversity of Local-Colored Rice Landraces Using SSR Markers", International Letters of Natural Sciences, Vol. 67, pp. 24-34, 2018
Online since:
February 2018
Export:
Distribution:
References:

[1] R.S. Chaudhary, Speciality rices of the world: Effect of WTO and IPR on its production trend and marketing, Food Agric. Environ. 1 (2003) 34-41.

[2] M. Suzuki et al., Comparison of mineral contents in 8 cultivars of pigmented brown rice, J. Jpn. Soc. Food Sci. Technol. 51 (2004) 424-427.

[3] H.Y. Yoshida, Y. Tomiyama, Y. Mizushina, Lipid components, fatty acids and triacylglycerol molecular species of black and red rice, Food. Chem. 123(2) (2010) 210-215.

[4] L.H. Anh et al., Effect of salt on growth of rice landraces in Vietnam, Int. Let. Nat. Sci. 59 (2016) 72-81.

[5] V.C. Lapitan et al., Assessment of genetic diversity of Philippine rice cultivars carrying good quality traits using SSR markers, Breeding Sci. 57(4) (2007) 263-270.

[6] K.T. Le, Y. Yang, Morphological characterization and photochemical analysis of pigmented rice cultivars from diverse regions, Breeding, Genetic and Physiology. (2005) 77-86.

[7] S.J.M Gowda et al., Morpho-agronomic and simple sequence repeat-based diversity in colored rice (Oryza sativa L.) germplasm from peninsular India, Genetic Resources and Crop Evolution. 59(2) (2012) 179-189.

[8] Brara et al., Correlation of molecular marker allele size with physio-morphological and micronutrient (Zn, Fe) traits among rice genotypes, Int. J. Curr. Sci. 15 (2015) 42-50.

[9] F. Ahmad et al., Genetic divergence and heritability of 42 coloured upland rice genotypes (Oryza sativa) as revealed by microsatellites marker and agro-morphological traits, PloS ONE. 10(9) (2015) e0138246.

[10] H.T. Hue et al., Evaluation of genetic diversity, yield and grain quality of local rice (Oryza sativa L.) accessions collected from the North of Vietnam, Annual scientific conference at Plant Resources Center, (2015).

[11] K. Zheng, Rapid DNA isolation for marker assisted selection in rice breeding, Rice Genet. Newsl. 12 (1995) 255-258.

[12] F.J. Rohlf, NTSYS-pc: Numerical taxonomy and multivariate analysis System, Exeter Publishing Ltd, ver. 2.1, (2002).

[13] M. Nei, Analysis of gene diversity in subdivided populations, Proceedings of the National Academy of Sciences. 70(12) (1973) 3321-3323.

[14] S.A. Mohammadi, B.M. Prasanna, Analysis of genetic diversity in crop plants salient statistical tools and considerations, Crop Sci. 43(4) (2003) 1235-1248.

[15] H.A. Freeg et al., Genetic diversity among some rice genotypes with different drought tolerance based on SSR Markers, Cercetari Agronomice in Moldova. 49(3) (2016) 39-50.

[16] I. Soe et al., Genetic diversity of rice (Oryza sativa) germplasm from six countries using simple sequence repeat markers, African Journal of Biotechnology. 15(37) (2016) 2038-(2044).

Show More Hide
Cited By:

[1] Y. Zhao, Y. Wang, L. Wang, D. Zhang, " Molecular identification of mung bean accessions ( Vigna radiata L.) from Northeast China using capillary electrophoresis with fluorescence‐labeled SSR markers ", Food and Energy Security, 2019

DOI: https://doi.org/10.1002/fes3.182

[2] M. Syed, K. Iftekharud, P. Biswas, N. Akter, M. Hossain, "Assessment of Genetic Diversity in Arsenic Contaminated Rice Using SSR Markers", Trends in Applied Sciences Research, Vol. 14, p. 178, 2019

DOI: https://doi.org/10.3923/tasr.2019.178.185