Pulsed-Field Gel Electrophoresis as a Molecular Tool for Characterizing Genomes of Certain Food-Borne Bacterial Isolates - A Review

Pal, Partha

doi:10.18052/www.scipress.com/ILNS.29.13

ILNS > ILNS Volume 29 > Pulsed-Field Gel Electrophoresis as a Molecular...

< Back to Volume

Pulsed-Field Gel Electrophoresis as a Molecular Tool for Characterizing Genomes of Certain Food-Borne Bacterial Isolates - A Review

Removed due to plagiarism

Full Text PDF

Abstract:

The evolutionary transition from phenotypic to molecular analysis of infectious disease in bacterial epidemiology led to the search for suitable approaches to ascertain genomic relatedness or heterogeneity between bacterial clinical isolates. Pulsed-field gel electrophoresis (PFGE) technique was developed for separating and analyzing long DNA fragments of several megabases in alternating electric field. Comparison of electrophoresis profiles of restriction enzyme-digested genomic DNA from bacterial isolates has proved to be a useful epidemiological tool for genetic discrimination of bacterial strains, detection of genetic relatedness, to locate the source of outbreak and to monitor the spread of the microorganisms in endemic zones. PFGE is considered as a gold standard method for typing of bacterial isolates because of the remarkable endurance of this technique as a typing method for the last 20 years in molecular epidemiology. In this current review the pros and cons of PFGE use in current molecular microbiological research are explored in the context of determination of genome organization of certain food-borne bacterial isolates causing infectious diseases in human beings.

Info:

Periodical:

International Letters of Natural Sciences (Volume 29)

Pages:

13-23

DOI:

https://doi.org/10.18052/www.scipress.com/ILNS.29.13

Citation:

P. Pal, "Pulsed-Field Gel Electrophoresis as a Molecular Tool for Characterizing Genomes of Certain Food-Borne Bacterial Isolates - A Review", International Letters of Natural Sciences, Vol. 29, pp. 13-23, 2015

Online since:

November 2014

Authors:

Partha Pal

Keywords:

Epidemiology, Genome Diversity, Molecular Typing, PFGE, Restriction Enzyme

Export:

RIS, BibTeX, Text

Distribution:

Open Access

This work is licensed under a
Creative Commons Attribution 4.0 International License

References:

[1] Allard M.W., et al., PLoS ONE. 8(1) (2013) e55254.

[2] Barrett T.J., Gerner-Smidt P., Swaminathan B., Foodborne Pathogen Dis. 3 (2006) 20-31.

[3] Basim H., Stall R.E., Minsavage J., Jones J., Phytopathology, 89 (1999) 1044-1049.

[4] Bettelheim K.A., Crit Rev Microbiol 33 (2007) 67-87.

[5] Beutin L., Martin A., J Food Prot. 75 (2012) 408-418.

[6] Birren B.W., Lai E., Clark S.M., Houd L., Simon M.I., Nucl Acids Res. 16 (1988) 7563-7581.

[7] Botteldoorn N. et al., Zoonoses Public Health 57(5) (2010) 345-357.

[8] Bourgeois P.L., Lautier M., Berghe L.V.D., Gasson M.J., Ritzenthaler P., J. Bacteriology. 177 (1995) 2840-2850.

[9] Bourke B., Sherman P., Louie H., Hani E., Islur P., Chan V.L., Microbiology 141 (1995) 2417-2424.

DOI: https://doi.org/10.1099/13500872-141-10-2417

[10] Brooks J.T., Sowers E.G., Wells J.G., Greene K.D., Griffin P.M., Hoekstra R.M., Strockbine N.A., J Infect Dis. 192 (2005) 1422-1429.

[11] Call D.R., Brockman F.J., Chandler D.P., Int J Food Microbiol. 67 (2001) 71-80.

[12] Cambray G., Guerout A.M., Mazel D., Annu Rev Genet 44 (2010) 141-166.

[13] Caprioli A., Morabito S., Bruge`re H., Oswald E., Vet Res 36 (2005) 289-311.

[14] Carle G.F., Frank F., Olson M.V., Science. 232 (1986) 65-68.

[15] Carle G.F., Olson M.V., Nucl. Acids Res. 14 (1984) 5 647-5663.

[16] Cebula T.A., Brown E.W., Jackson S.A., Mammel M.K., Mukherjee A., LeClerc J.E., Expert Rev Mol Diagn 5 (2005) 431-445.

[17] Chen C.-H., Shimada T., Elhadi N., Radu S., Nishibuchi M., Applied and Environmental Microbiology 70 (4) (2004) 1964-1972.

[18] Chu G., Vollrath D., Davis R.W., Science 234 (1986) 1582-1585.

[19] Churin Y.N., Shalak I.N., Borner T., Shestakov S.V., J. Bacteriology 177 (1995) 3337-3343.

[20] Clawson M.L., Keen J.E., Smith T.P.L., Durso L.M., McDaneld T.G., Robert E., Mandrell R.E., Davis M.A., Bono J.L., Genome Biology 10 (2009) R56.

DOI: https://doi.org/10.1186/gb-2009-10-5-r56

[21] Correia A., Martin J.F., Castro J.M., Microbiology. 140 (1994) 2841-2847.

[22] Davis M.A., Hancock D.D., Besser T.E., Call D.R., J Clin Microbiol. 41(5) (2003) 1843-1849.

[23] Dempsey J.A.F., Livaker W., Madhure A., Snodgrass T.L., Cannon J.G., J. Bacteriology 173 (1991) 5476-5486.

[24] Elhadi N., Radu S., Chen C.-H., Nishibuchi M., Journal of Food Protection. 67(7) (2004) 1469-1475.

[25] Faruque S.M., Chowdhury N., Kamruzzaman M., Dziejman M., Rahman M.H., Sack D.A., Nair G.B., Mekalanos J.J., Proc Natl Acad Sci U.S.A. 101 ( 7) (2004) 2123-2128.

DOI: https://doi.org/10.1073/pnas.0308485100

[26] Fitzgerald C., Collins M., van Duyne S., Mikoleit M., Brown T., et al., J Clin Microbiol 45 (2007) 3323-3334.

[27] Fluit A.C., Schmitz F.J., Clin Microbiol Infect 10 (2004) 272-288.

[28] Gardiner, K., Analytical Chemistry. 63 (1991) 658-665.

[29] Goh K., Chua D., Beck B., McKee M.L, Bhagwat A.A., Arch Microbiol 193 (2010) 179-185.

[30] Guard J., Morales C.A., Fedorka-Cray P., Gast R.K. BMC Res Notes. 26 (4) (2011) 369.

[31] Gyles C.L., J Anim Sci. 85 (2007) E45-62.

[32] Hudson C.R., Garcia M., Gast R.K., Maurer J.J., Avian Dis 45 (2001) 875-886.

[33] Iguchi A., Osawa R., Kawano J., Shimizu A., Terajima J., Watanabe H., J Clin Microbiol. 40 (2002) 3079-3081.

[34] Karmali M.A., Kidney Int Suppl. (2009) S4-7.

[35] Kaufmann M.E., Pitt T.L., Methods in Practical Laboratory Bacteriology. 83 (1994).

[36] Ke X., Gu B., Pan S., Tong M., Arch Microbiol. 193 (2011) 767-774.

[37] Kudva I.T., Evans P.S., Perna N.T., Barrett T.J., Ausubel F.M., Blattner F.R., Calderwood S.B., J Bacteriol. 184 (2002) 1873-1879.

[38] Lai E., Birren B.W., Clark S.M., Simon M.I., Hood L., Biotechniques. 7(1989) 34-42.

[39] Laorden L. et al., J Clin Microbio. 48(12) (2010) 4563-4566.

[40] Levene S.D., Methods in Molecular Biology (1992) 345-365.

[41] Lina T.T. et al., PLoS ONE 9(10) (2014) e108735.

[42] Liu F., Kariyawasam S., Jayarao B.M., Barrangou R., Gerner-Smidt P., Ribot E.M., Knabel S.J., Dudley E.G., Appl Environ Microbiol. 77(13) (2011) 4520-4526.

DOI: https://doi.org/10.1128/aem.00468-11

[43] Madiyarov R.S., Bektemirov A.M., Ibadova G.A., Abdukhalilova G.K., Khodiev A.V., Bohidatta L., Sethabutr O., Mason C.J., Gut Pathog 2 (2010) 18.

DOI: https://doi.org/10.1186/1757-4749-2-18

[44] Maloy S.R., Cronan J.E. Jr., Freifelder D., Microbial Genetics. Jones and Bartlett Publishers. Second Edition (1994) 45-47.

[45] Mathusa E.C., Chen Y., Enache E., Hontz L., J Food Prot. 73 (2010) 1721-1736.

[46] McQuiston J.R., Herrera-Leon S., Wertheim B.C., Doyle J., Fields P.I., Tauxe R.V., Logsdon J.M. Jr., J Bacteriol 190 (2008) 7060-7067.

[47] Morita M., et al., Journal of Medical Microbiology. 59 (2010) 708-712.

[48] Nandi B., Nandy R.K., Mukhopadhyay S., Nair G.B., Shimada T., Ghose A.C., Journal of Clinical Microbiology 38(11) (2000) 4145-4151.

[49] Nastasi A., Pignato S., Mammina C., Giammanco G., Epidemiol Infect 110 (1993) 23-30.

[50] Olivier V., Salzman N.H., Fullner Satchell K.J., Infection and Immunity 75(10) (2007) 5043-5051.

[51] Olsen J.E., Skov M.N., Threlfall E.J., Brown D.J., J Med Microbiol 40 (1994) 15-22.

[52] Olson A.B., Andrysiak A.K., Tracz D.M., Guard-Bouldin J., Demczuk W., Ng L.K., Maki A., Jamieson F., Gilmour M.W., BMC Microbiol. 1(7) (2007) 87.

DOI: https://doi.org/10.1186/1471-2180-7-87

[53] Pal P., Pal A., Niyogi S.K., Ramamurthy T., Bhadra R.K., Indian J Med Res. 137 (2013) 169-177.

[54] Pyle L.E., Taylor T., Finch L.R., J. Bacteriology. 172 (1990) 7265-7268.

[55] Ranjbar R., Aleo A., Giammanco G.M., Dionisi A.M., Sadeghifard N., Mammina C., BMC Infect Dis. 7 (2007) 62.

[56] Rivera I.N.G., Chun J., Huq A., Sack R.B., Colwell R.R., Applied and Environmental Microbiology 67(6) (2001) 2421-2429.

DOI: https://doi.org/10.1128/aem.67.6.2421-2429.2001

[57] Roussel Y., Pebay M., Guedon G., Simonet J.M., Decaris B., J. Bacteriology 176 (1994) 7413-7422.

DOI: https://doi.org/10.1128/jb.176.24.7413-7422.1994

[58] Rowe-Magnus D.A., Mazel D., Int J Med Microbiol 292 (2002) 115-125.

[59] Salazar N.M., Caetano-Anolle ´s G., Nucleic Acids Res. 24 (1996) 5056-5057.

[60] Schwartz D.C., Saffran W., Welsh J., Haas R., Goldenberg M., Cantor C.R., Cold Spring Harbor Symposia on Quantitative Biology, XLVII. (1982) 189-195.

DOI: https://doi.org/10.1101/sqb.1983.047.01.024

[61] Shah D.H., Casavant C., Hawley Q., Addwebi T., Call D.R., Guard J., Foodborne Pathog Dis 9(3) (2012) 258-264.

[62] Shere J.A., Bartlett K.J., Kaspar C.W., Appl. Environ. Microbiol. 64 (1998) 1390-1399.

[63] Singh D.V., Matte M.H., Matte G.R. Jiang S., Sabeena F., Shukla B.N., Sanyal S.C., Huq A., Colwell R.R., Applied and Environmental Microbiology 67 (2) (2001) 910-921.

DOI: https://doi.org/10.1128/aem.67.2.910-921.2001

[64] Smith C.J., Coote J.G., Parton R.R., J. Gen. Microbiol. 1432 (1986) 2685-2692.

[65] Smith C.L., Klco S.R., Cantor C.R., Washington D.C., IRL Press Oxford. (1988) 41-72.

[66] Southern E.M., Anand R., Brown W.R., Fletcher D.S., Nucl. Acids Res. 15 (1987) 5925-5943.

[67] Soyer Y., et al, J Clin Microbiol. 47 (2009) 3546-3556.

[68] Steward G., Furst A., Avdalovic N., Biotechniques 6 (1988) 68-73.

[69] Sukhnanand S., Alcaine S., Warnick L.D., Su W-L., Hof J., Craver M.P., McDonough P., Boor K.J., Wiedmann M., J Clin Microbiol. 43 (2005) 3688-3698.

DOI: https://doi.org/10.1128/jcm.43.8.3688-3698.2005

[70] Swaminathan B., Barrett T.J., Hunter S.B., Tauxe R.V., Emerg Infect Dis.7 (2001) 382-389.

[71] Talukder K.A., Khajanchi B.K., Islam M.A., Dutta D.K., Islam Z., Khan S.I., Nair G.B., Sack D.A., Epidemiol Infect 134 (2006) 1249-1256.

DOI: https://doi.org/10.1017/s0950268806006029

[72] Tankouo-Sandjong B., Kinde H., Wallace I., FEMS Micro Let 331(2) (2012) 165-175.

[73] Teh C.S.J., Chua K.H., Thong K.L. Journal of Biomedicine and Biotechnology (2010) 1-7.

[74] Ud-Din A.I.M.S., et al., PLoS ONE 8(12) (2013) e82601.

[75] Vadivelu J., Iyer L., Kshatriya B.M., Puthucheary S.D., Epidemiology and Infection. 124(1) (2000) 25-30.

[76] Vinas M.R., et al., PLoS Negl Trop Dis. 7(12) (2013) e2521.

[77] Weissman J.B., Gangorosa E.J., Schmerler A., Marier R.L., Lewis J.N. Lancet 1 (1975) 88-90.

[78] White P.A., McIver C.J., Rawlinson W.D., Antimicrob Agents Chemother 45 (2001) 2658-2661.

[79] WHO, Geneva, Switzerland. (1987) 9-20.

[80] Wise M.G., Siragusa G.R., Plumblee J., Healy M., Cray P.J., Seal B.S., J Microbiol Methods 76 (2009) 18-24.

[81] Xi M., Zheng J., Zhao S., Brown E.W., Meng J., J Food Prot 71 (2008) 2067-2072.

[82] Zhao S., Mitchell S.E., Meng J., Kresovich S., Doyle M., Dean R.E., Casa A., Weller J., Microb Infect. 2 (2000)107-113.

[83] Zheng J., Keys C.E., Zhao S., Meng J., Brown E.W., Emerg Infect Dis 13 (2007) 1932-1935.

[84] Ziegler A., Vols A., Methods in Molecular Biology (1992) 63-72. ( Received 23 October 2014; accepted 31 October 2014 ).

Show More Hide

Cited By:

[1] M. Hajia, "Molecular Epidemiology and Surveillance Program in Iran: Present Status and Future Prospect", International Journal of Epidemiologic Research, Vol. 5, p. 159, 2018

DOI: https://doi.org/10.15171/ijer.2018.32